STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU78_22935Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
EU78_06525
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.589
EU78_13160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
EU78_22930
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.537
EU78_14665
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
EU78_24630
Pilus biosynthesis protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
EU78_06460
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.452
EU78_11070
Proteasome protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.441
EU78_15960
Carboxylate--amine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.441
EU78_20430
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
EU78_06400
Reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.406
Your Current Organism:
Mycolicibacterium rufum
NCBI taxonomy Id: 318424
Other names: CIP 109273, JCM 16372, M. rufum, Mycobacterium rufum, Mycobacterium rufum Hennessee et al. 2009, Mycobacterium sp. JS14, Mycolicibacterium rufum (Hennessee et al. 2009) Gupta et al. 2018, strain JS14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.