STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU78_25450Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)    
Predicted Functional Partners:
EU78_05810
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.871
EU78_17965
Nucleoside diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.856
EU78_05215
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.835
EU78_21920
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.835
EU78_24715
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.835
EU78_00380
Potassium ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.830
EU78_04530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.830
EU78_00335
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.806
EU78_11705
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.806
EU78_26915
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.802
Your Current Organism:
Mycolicibacterium rufum
NCBI taxonomy Id: 318424
Other names: CIP 109273, JCM 16372, M. rufum, Mycobacterium rufum, Mycobacterium rufum Hennessee et al. 2009, Mycobacterium sp. JS14, Mycolicibacterium rufum (Hennessee et al. 2009) Gupta et al. 2018, strain JS14
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.