STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU78_28060ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
EU78_10095
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.976
EU78_10100
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.963
EU78_06075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.906
EU78_28055
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.906
EU78_09330
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.875
EU78_21340
Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.856
EU78_17490
Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
0.818
EU78_24145
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.811
EU78_25730
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.803
EU78_28065
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.748
Your Current Organism:
Mycolicibacterium rufum
NCBI taxonomy Id: 318424
Other names: CIP 109273, JCM 16372, M. rufum, Mycobacterium rufum, Mycobacterium rufum Hennessee et al. 2009, Mycobacterium sp. JS14, Mycolicibacterium rufum (Hennessee et al. 2009) Gupta et al. 2018, strain JS14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.