STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001455895_00137Unannotated protein. (418 aa)    
Predicted Functional Partners:
GCA_001455895_00136
Unannotated protein.
 
 
 0.991
GCA_001455895_00138
Unannotated protein.
 
 
 0.989
ptsP
Unannotated protein.
  
 
 0.863
hisI
Unannotated protein; In the N-terminal section; belongs to the PRA-CH family.
   
    0.851
C0W70_01920
Unannotated protein.
  
 
 0.844
rpmE
Unannotated protein; Binds the 23S rRNA.
   
    0.840
rpmJ
Unannotated protein; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.840
urtA
Unannotated protein.
   
    0.840
C0W70_09000
Unannotated protein.
   
    0.840
C0W70_12400
Unannotated protein.
  
 
 0.835
Your Current Organism:
Photobacterium kishitanii
NCBI taxonomy Id: 318456
Other names: LMG 23890, LMG:23890, P. kishitanii, Photobacterium kishitanii Ast et al. 2007, strain pjapo.1.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.