Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C0W70_05425 | C0W70_10555 | GCA_001455895_00189 | GCA_001455895_04304 | Unannotated protein. | Unannotated protein. | 0.404 |
C0W70_05425 | C0W70_16320 | GCA_001455895_00189 | GCA_001455895_01632 | Unannotated protein. | Unannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.404 |
C0W70_05425 | C0W70_20785 | GCA_001455895_00189 | GCA_001455895_01174 | Unannotated protein. | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.779 |
C0W70_05425 | GCA_001455895_03963 | GCA_001455895_00189 | GCA_001455895_03963 | Unannotated protein. | Unannotated protein. | 0.762 |
C0W70_05425 | nfuA | GCA_001455895_00189 | GCA_001455895_00706 | Unannotated protein. | Unannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.909 |
C0W70_05425 | sdhB | GCA_001455895_00189 | GCA_001455895_03637 | Unannotated protein. | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.779 |
C0W70_10555 | C0W70_05425 | GCA_001455895_04304 | GCA_001455895_00189 | Unannotated protein. | Unannotated protein. | 0.404 |
C0W70_10555 | GCA_001455895_03963 | GCA_001455895_04304 | GCA_001455895_03963 | Unannotated protein. | Unannotated protein. | 0.404 |
C0W70_10555 | djlA | GCA_001455895_04304 | GCA_001455895_01042 | Unannotated protein. | Unannotated protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.967 |
C0W70_10555 | hscB | GCA_001455895_04304 | GCA_001455895_01634 | Unannotated protein. | Unannotated protein; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.967 |
C0W70_10555 | iscS | GCA_001455895_04304 | GCA_001455895_01631 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.996 |
C0W70_10555 | nfuA | GCA_001455895_04304 | GCA_001455895_00706 | Unannotated protein. | Unannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.937 |
C0W70_16140 | C0W70_20785 | GCA_001455895_01600 | GCA_001455895_01174 | Unannotated protein. | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.748 |
C0W70_16140 | nfuA | GCA_001455895_01600 | GCA_001455895_00706 | Unannotated protein. | Unannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.891 |
C0W70_16140 | sdhB | GCA_001455895_01600 | GCA_001455895_03637 | Unannotated protein. | Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.748 |
C0W70_16320 | C0W70_05425 | GCA_001455895_01632 | GCA_001455895_00189 | Unannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | Unannotated protein. | 0.404 |
C0W70_16320 | GCA_001455895_03963 | GCA_001455895_01632 | GCA_001455895_03963 | Unannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | Unannotated protein. | 0.404 |
C0W70_16320 | djlA | GCA_001455895_01632 | GCA_001455895_01042 | Unannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | Unannotated protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.967 |
C0W70_16320 | hscB | GCA_001455895_01632 | GCA_001455895_01634 | Unannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | Unannotated protein; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.997 |
C0W70_16320 | iscS | GCA_001455895_01632 | GCA_001455895_01631 | Unannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.999 |
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