STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C0W70_07485Unannotated protein; Belongs to the peptidase S11 family. (459 aa)    
Predicted Functional Partners:
C0W70_00960
Unannotated protein; Belongs to the peptidase S11 family.
  
     0.723
C0W70_14795
Unannotated protein.
     
 0.550
C0W70_14215
Unannotated protein.
     
 0.549
C0W70_21310
Unannotated protein.
   
 
 0.495
C0W70_17365
Unannotated protein.
     
 0.463
C0W70_12645
Unannotated protein.
  
 
 0.448
secB
Unannotated protein; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.415
C0W70_06615
Unannotated protein; Probably functions as a manganese efflux pump.
  
     0.405
C0W70_03450
Unannotated protein.
    
  0.405
Your Current Organism:
Photobacterium kishitanii
NCBI taxonomy Id: 318456
Other names: LMG 23890, LMG:23890, P. kishitanii, Photobacterium kishitanii Ast et al. 2007, strain pjapo.1.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.