STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C0W70_03170Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (392 aa)    
Predicted Functional Partners:
der
Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.866
cmk
Unannotated protein.
  
 0.775
rlmL
Unannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
 
 0.740
C0W70_20405
Unannotated protein.
  
    0.728
C0W70_03175
Unannotated protein; Belongs to the SUA5 family.
  
  
 0.536
C0W70_22440
Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 
 
 0.529
rppH
Unannotated protein; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
 
 
 
 0.523
C0W70_09075
Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 
 
 0.511
C0W70_13340
Unannotated protein; Belongs to the pseudouridine synthase RsuA family.
 
 
  
0.502
C0W70_03180
Unannotated protein.
       0.475
Your Current Organism:
Photobacterium kishitanii
NCBI taxonomy Id: 318456
Other names: LMG 23890, LMG:23890, P. kishitanii, Photobacterium kishitanii Ast et al. 2007, strain pjapo.1.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.