Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO99_03075Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
IO99_02280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.895
IO99_04235
Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.895
ecfT
Transporter; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 0.895
IO99_08170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.872
IO99_02530
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.860
IO99_08160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.860
IO99_10660
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.860
IO99_12650
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.860
IO99_15915
Peptide permease BMEII0860; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.860
IO99_10655
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.855
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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