Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO99_03095ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)    
Predicted Functional Partners:
IO99_03090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
IO99_03085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.935
ecfA-2
ABC transporter; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.620
IO99_18195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.500
IO99_05055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.494
IO99_12805
Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.485
IO99_16945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.479
IO99_06615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
IO99_16950
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.469
IO99_03100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.466
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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