Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO99_03255Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)    
Predicted Functional Partners:
IO99_01085
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
IO99_13070
Stage V sporulation protein K; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
IO99_14640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
IO99_05945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.945
IO99_07720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.935
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.932
IO99_04970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.920
IO99_14365
Succinoglycan biosynthesis protein exoa; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.920
IO99_05935
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.908
IO99_13960
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.907
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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