Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
IO99_03390GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)    
Predicted Functional Partners:
IO99_01030
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.826
IO99_15335
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.817
IO99_03395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
IO99_06170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
IO99_11095
Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
IO99_03400
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.575
IO99_15820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
IO99_06605
Shikimate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.551
IO99_06580
Diadenosine tetraphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
IO99_11940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.519
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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