Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
IO99_03395Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)    
Predicted Functional Partners:
IO99_03390
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
IO99_12025
Molecular chaperone Hsp90; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.695
IO99_03400
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.613
IO99_14530
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.
     
 0.493
IO99_03405
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.442
IO99_03385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
IO99_03380
2-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.410
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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