Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO99_04430Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
IO99_04435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
IO99_04425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.947
IO99_05965
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
IO99_14245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.629
IO99_09550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.591
IO99_12805
Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.587
cysS
cysteine--tRNA ligase; Catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.570
IO99_04420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
IO99_05995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.520
IO99_11115
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.505
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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