STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO99_06000ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
IO99_04435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.984
IO99_05965
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.968
IO99_05995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.965
IO99_06005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
IO99_05845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  0.676
IO99_14245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.642
IO99_04425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.639
IO99_09550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.607
IO99_06010
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.569
IO99_12805
Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.537
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.