Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO99_06005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)    
Predicted Functional Partners:
IO99_06010
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.959
IO99_05995
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.860
IO99_06150
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.838
IO99_02225
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.821
IO99_15585
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.820
IO99_05835
PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.815
IO99_14640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.811
IO99_05600
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.807
IO99_07755
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.807
IO99_09175
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.794
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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