Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO99_07445Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)    
Predicted Functional Partners:
IO99_07365
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.681
IO99_07440
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
IO99_01995
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.545
IO99_03400
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.517
IO99_04525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.462
IO99_02650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.435
IO99_07455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.427
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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