Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IO99_08855Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
IO99_08860
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.992
IO99_08870
Beta-aspartate methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.883
IO99_14815
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.882
rpmF
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.
  
  
 0.876
IO99_08875
Glycine/sarcosine/betaine reductase complex protein A; GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.870
IO99_08885
Beta-aspartyl peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.862
IO99_08865
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.856
IO99_08880
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.855
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  
 0.847
IO99_08900
GrdX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.836
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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