STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO99_08855Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
IO99_08860
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.994
IO99_14815
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.923
IO99_08870
Beta-aspartate methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.910
IO99_08875
Glycine/sarcosine/betaine reductase complex protein A; GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.894
IO99_08900
GrdX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.874
IO99_08885
Beta-aspartyl peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.864
IO99_08880
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.859
IO99_08865
Glycine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.857
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.844
rpmF
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.
  
  
 0.834
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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