STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO99_09545Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
IO99_09540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.986
IO99_09630
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.919
IO99_15590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.899
IO99_09170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.890
IO99_06145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.863
IO99_05595
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.858
IO99_10895
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.846
IO99_12015
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.829
IO99_12270
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.822
IO99_05830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.817
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.