Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IO99_13745DNA-packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)    
Predicted Functional Partners:
IO99_13740
Head-tail adaptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.787
IO99_13730
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
IO99_13735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
IO99_13725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
IO99_13720
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.753
IO99_13760
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.695
IO99_13750
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
IO99_13755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family.
       0.628
IO99_13765
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.618
IO99_13770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
Your Current Organism:
Clostridium sulfidigenes
NCBI taxonomy Id: 318464
Other names: C. sulfidigenes, Clostridium sulfidigenes Sallam and Steinbuchel 2009, DSM 18982, strain SGB2
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