STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0051PFAM: inner-membrane translocator; KEGG: rsp:RSP_2276 ABC branched amino acid transporter family, inner membrane subunit; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family. (368 aa)    
Predicted Functional Partners:
Pden_0050
PFAM: inner-membrane translocator; KEGG: rsp:RSP_2277 ABC branched amino acid transporter family, inner membrane subunit; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
 0.993
Pden_0049
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sit:TM1040_0114 ABC transporter related; TC 3.A.1.4.-.
  
 0.956
Pden_0052
KEGG: rsp:RSP_2275 ABC branched amino acid transporter family, periplasmic substrate-binding subunit; TC 3.A.1.4.-.
 
  
 0.955
Pden_0053
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2274 ABC branched amino acid transporter family, ATPase subunit; TC 3.A.1.4.-.
  
 0.927
Pden_0048
PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_2279 long chain acyl-CoA synthetase.
 
    0.904
Pden_0054
KEGG: sil:SPO3289 phenylacetate-CoA ligase, putative.
 
    0.883
Pden_3057
PFAM: inner-membrane translocator; KEGG: sil:SPO2531 branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
  
 0.816
Pden_3929
PFAM: inner-membrane translocator; KEGG: rsp:RSP_2926 ABC branched-chain amino acid transporter family, inner membrane subunit; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
  
 0.780
Pden_3056
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO2532 branched-chain amino acid ABC transporter, ATP-binding protein; TC 3.A.1.4.-.
  
 0.753
Pden_3932
PFAM: Extracellular ligand-binding receptor; KEGG: rsp:RSP_2923 ABC branched amino acid transporter family, periplasmic substrate-binding protein; TC 3.A.1.4.-.
 
  
 0.751
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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