Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Pden_0100Plasmid mobilization system relaxase; PFAM: MobA/MobL protein; KEGG: rpc:RPC_0149 MobA/MobL protein. (998 aa)    
Predicted Functional Partners:
Pden_2794
TIGRFAM: UvrD-like DNA helicase, C terminal; PFAM: UvrD/REP helicase; KEGG: rsp:RSP_1527 helicase, UvrD/Rep family; Belongs to the helicase family. UvrD subfamily.
  
 
 0.865
Pden_0102
PFAM: Prophage CP4-57 regulatory; KEGG: rpe:RPE_3260 phage transcriptional regulator, AlpA.
 
     0.743
Pden_2656
ATP-dependent DNA helicase RecQ; KEGG: rsp:RSP_1359 DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
  
 
 0.655
Pden_4295
ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; KEGG: rsp:RSP_2092 putative UvrD/DNA helicase II.
  
 
 0.609
Pden_1438
KEGG: bte:BTH_I2719 pathogenesis-related protein.
  
 
 0.573
Pden_1374
PFAM: metallophosphoesterase; KEGG: nha:Nham_1359 metallophosphoesterase.
   
 
 0.562
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.561
Pden_0099
KEGG: rpe:RPE_3258 hypothetical protein.
       0.554
Pden_0098
PFAM: Conjugal transfer TraD family protein; KEGG: rpc:RPC_4518 conjugal transfer TraD.
       0.553
Pden_0097
Hypothetical protein.
       0.518
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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