Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Pden_0131 | Pden_0136 | KEGG: nwi:Nwi_0845 hypothetical protein. | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | 0.770 |
Pden_0131 | Pden_0139 | KEGG: nwi:Nwi_0845 hypothetical protein. | KEGG: bja:bll0044 hypothetical protein. | 0.776 |
Pden_0131 | Pden_0142 | KEGG: nwi:Nwi_0845 hypothetical protein. | PFAM: TRAG family protein; KEGG: mes:Meso_0515 TraG protein. | 0.673 |
Pden_0131 | Pden_0143 | KEGG: nwi:Nwi_0845 hypothetical protein. | KEGG: bja:bll0042 hypothetical protein. | 0.775 |
Pden_0131 | Pden_1506 | KEGG: nwi:Nwi_0845 hypothetical protein. | PFAM: TRAG family protein; KEGG: mlo:mlr9747 plasmid transfer factor, traG protein. | 0.694 |
Pden_0131 | Pden_1507 | KEGG: nwi:Nwi_0845 hypothetical protein. | KEGG: bja:bll0044 hypothetical protein. | 0.770 |
Pden_0131 | Pden_3187 | KEGG: nwi:Nwi_0845 hypothetical protein. | KEGG: mes:Meso_3848 hypothetical protein. | 0.773 |
Pden_0131 | Pden_3377 | KEGG: nwi:Nwi_0845 hypothetical protein. | KEGG: bja:bll0044 hypothetical protein. | 0.776 |
Pden_0136 | Pden_0131 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: nwi:Nwi_0845 hypothetical protein. | 0.770 |
Pden_0136 | Pden_0139 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: bja:bll0044 hypothetical protein. | 0.849 |
Pden_0136 | Pden_0142 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | PFAM: TRAG family protein; KEGG: mes:Meso_0515 TraG protein. | 0.778 |
Pden_0136 | Pden_0143 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: bja:bll0042 hypothetical protein. | 0.798 |
Pden_0136 | Pden_1506 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | PFAM: TRAG family protein; KEGG: mlo:mlr9747 plasmid transfer factor, traG protein. | 0.745 |
Pden_0136 | Pden_1507 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: bja:bll0044 hypothetical protein. | 0.774 |
Pden_0136 | Pden_3178 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: mes:Meso_3841 putative transcriptional regulator. | 0.772 |
Pden_0136 | Pden_3187 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: mes:Meso_3848 hypothetical protein. | 0.777 |
Pden_0136 | Pden_3369 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: nwi:Nwi_0845 hypothetical protein. | 0.770 |
Pden_0136 | Pden_3377 | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | KEGG: bja:bll0044 hypothetical protein. | 0.777 |
Pden_0139 | Pden_0131 | KEGG: bja:bll0044 hypothetical protein. | KEGG: nwi:Nwi_0845 hypothetical protein. | 0.776 |
Pden_0139 | Pden_0136 | KEGG: bja:bll0044 hypothetical protein. | PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor. | 0.849 |
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