STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0143KEGG: bja:bll0042 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Pden_0142
PFAM: TRAG family protein; KEGG: mes:Meso_0515 TraG protein.
 
     0.944
Pden_0139
KEGG: bja:bll0044 hypothetical protein.
 
     0.831
Pden_0136
PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor.
 
     0.798
Pden_3377
KEGG: bja:bll0044 hypothetical protein.
 
     0.777
Pden_1507
KEGG: bja:bll0044 hypothetical protein.
 
     0.776
Pden_0131
KEGG: nwi:Nwi_0845 hypothetical protein.
 
   
 0.775
Pden_3178
KEGG: mes:Meso_3841 putative transcriptional regulator.
 
   
 0.775
Pden_3187
KEGG: mes:Meso_3848 hypothetical protein.
 
     0.775
Pden_3369
KEGG: nwi:Nwi_0845 hypothetical protein.
 
   
 0.775
Pden_1506
PFAM: TRAG family protein; KEGG: mlo:mlr9747 plasmid transfer factor, traG protein.
 
     0.770
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
Server load: low (14%) [HD]