Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Pden_0146KEGG: mes:Meso_0499 hypothetical protein. (80 aa)    
Predicted Functional Partners:
Pden_0150
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mes:Meso_0503 TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.934
Pden_0147
PFAM: conjugation TrbI family protein; KEGG: mes:Meso_0500 conjugation TrbI-like protein.
 
   
 0.928
Pden_0152
KEGG: mes:Meso_3855 conjugal transfer protein TrbJ.
 
     0.920
Pden_0149
PFAM: Conjugal transfer protein; KEGG: mes:Meso_0502 conjugal transfer protein.
 
     0.919
Pden_0148
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX.
 
     0.916
Pden_0151
KEGG: mes:Meso_2319 hypothetical protein.
 
     0.865
Pden_0154
KEGG: mes:Meso_0507 conjugal transfer protein TrbB.
 
     0.862
Pden_0153
SMART: AAA ATPase; KEGG: mes:Meso_2321 ATPas.
 
     0.842
Pden_0155
PFAM: Conjugal transfer protein TrbC; KEGG: mes:Meso_2323 conjugal transfer protein TrbC.
 
     0.793
Pden_0156
PFAM: type II secretion system protein E; KEGG: mes:Meso_2324 type II secretion system protein E.
 
     0.758
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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