STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0171PFAM: monooxygenase, FAD-binding; KEGG: bja:blr0106 probable monooxygenase. (381 aa)    
Predicted Functional Partners:
Pden_0172
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr0107 probable coenzyme A ligase.
  
 0.957
Pden_0720
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mes:Meso_1173 NADH:flavin oxidoreductase/NADH oxidase.
   
 0.920
Pden_3476
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ccr:CC3083 FMN oxidoreductase.
    
 0.901
Pden_0175
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: bja:blr1052 putative ABC transporter binding protein; TC 3.A.1.4.-.
 
    0.641
Pden_0170
PFAM: thioesterase superfamily protein; KEGG: gka:GK1990 4-hydroxybenzoyl-CoA thioesterase.
 
     0.634
Pden_0169
PFAM: regulatory proteins, IclR; KEGG: dar:Daro_0384 regulatory proteins, IclR.
 
   
 0.603
Pden_0173
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rme:Rmet_4907 fumarylacetoacetate (FAA) hydrolase.
  
  
 0.558
Pden_0174
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mlo:mlr1135 maleylacetoacetate isomerase.
     
 0.554
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
 
 0.498
Pden_4017
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rsp:RSP_0301 ABC branched chain amino acid transporter, substrate binding protein; TC 3.A.1.4.-.
   
    0.467
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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