Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Pden_0182 | Pden_0184 | RNAse Z; KEGG: rme:Rmet_3785 beta-lactamase-like protein. | KEGG: oih:OB0952 hypothetical protein. | 0.494 |
Pden_0182 | Pden_0185 | RNAse Z; KEGG: rme:Rmet_3785 beta-lactamase-like protein. | KEGG: oih:OB0951 hypothetical protein. | 0.558 |
Pden_0182 | Pden_0949 | RNAse Z; KEGG: rme:Rmet_3785 beta-lactamase-like protein. | PFAM: DNA/RNA non-specific endonuclease; KEGG: rha:RHA1_ro05345 hypothetical protein. | 0.845 |
Pden_0182 | Pden_1201 | RNAse Z; KEGG: rme:Rmet_3785 beta-lactamase-like protein. | KEGG: oih:OB0952 hypothetical protein. | 0.439 |
Pden_0184 | Pden_0182 | KEGG: oih:OB0952 hypothetical protein. | RNAse Z; KEGG: rme:Rmet_3785 beta-lactamase-like protein. | 0.494 |
Pden_0184 | Pden_0185 | KEGG: oih:OB0952 hypothetical protein. | KEGG: oih:OB0951 hypothetical protein. | 0.931 |
Pden_0184 | Pden_0186 | KEGG: oih:OB0952 hypothetical protein. | Amidohydrolase; KEGG: bja:blr5691 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein. | 0.617 |
Pden_0184 | Pden_0187 | KEGG: oih:OB0952 hypothetical protein. | PFAM: regulatory protein, MarR; KEGG: sil:SPO1261 transcriptional regulator, MarR family. | 0.533 |
Pden_0184 | Pden_0949 | KEGG: oih:OB0952 hypothetical protein. | PFAM: DNA/RNA non-specific endonuclease; KEGG: rha:RHA1_ro05345 hypothetical protein. | 0.430 |
Pden_0184 | Pden_1407 | KEGG: oih:OB0952 hypothetical protein. | KEGG: rsp:RSP_2286 hypothetical protein. | 0.544 |
Pden_0184 | Pden_1931 | KEGG: oih:OB0952 hypothetical protein. | KEGG: rsp:RSP_6052 hypothetical protein. | 0.511 |
Pden_0184 | Pden_2615 | KEGG: oih:OB0952 hypothetical protein. | PFAM: Patatin; KEGG: sus:Acid_5056 patatin. | 0.463 |
Pden_0184 | Pden_3925 | KEGG: oih:OB0952 hypothetical protein. | KEGG: jan:Jann_1578 transcriptional regulator, SARP family. | 0.532 |
Pden_0185 | Pden_0182 | KEGG: oih:OB0951 hypothetical protein. | RNAse Z; KEGG: rme:Rmet_3785 beta-lactamase-like protein. | 0.558 |
Pden_0185 | Pden_0184 | KEGG: oih:OB0951 hypothetical protein. | KEGG: oih:OB0952 hypothetical protein. | 0.931 |
Pden_0185 | Pden_0186 | KEGG: oih:OB0951 hypothetical protein. | Amidohydrolase; KEGG: bja:blr5691 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein. | 0.682 |
Pden_0185 | Pden_0187 | KEGG: oih:OB0951 hypothetical protein. | PFAM: regulatory protein, MarR; KEGG: sil:SPO1261 transcriptional regulator, MarR family. | 0.562 |
Pden_0185 | Pden_0949 | KEGG: oih:OB0951 hypothetical protein. | PFAM: DNA/RNA non-specific endonuclease; KEGG: rha:RHA1_ro05345 hypothetical protein. | 0.474 |
Pden_0185 | Pden_1201 | KEGG: oih:OB0951 hypothetical protein. | KEGG: oih:OB0952 hypothetical protein. | 0.784 |
Pden_0185 | Pden_1407 | KEGG: oih:OB0951 hypothetical protein. | KEGG: rsp:RSP_2286 hypothetical protein. | 0.568 |
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