Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_0280PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20427 putative amino acid ABC transporter ATP-binding protein. (261 aa)    
Predicted Functional Partners:
Pden_0281
Hydroxyectoine-binding protein / ectoine-binding protein; PFAM: extracellular solute-binding protein, family 3; KEGG: mlo:mlr7133 amino acid ABC transporter protein, solute-binding component.
 
 0.994
Pden_0282
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20429 putative amino acid ABC transporter permease protein.
 
 0.994
Pden_0283
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20430 putative amino acid ABC transporter permease protein.
 0.994
Pden_0717
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1296 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; TC 3.A.1.3.-.
 
 0.875
Pden_1027
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_47950 putative amino acid ABC transporter permease; TC 3.A.1.3.-.
 
 
 0.874
Pden_1149
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmb:BruAb1_1931 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
 
 0.873
Pden_1074
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3098 ABC transporter permease protein.
 
 
 0.872
Pden_1148
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bme:BMEI0113 asparagine transport system permease protein; TC 3.A.1.3.-.
 
 
 0.872
Pden_0718
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1297 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; TC 3.A.1.3.-.
 
 
 0.868
Pden_1026
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20264 putative amino acid ABC transporter permease protein; TC 3.A.1.3.-.
 
 
 0.868
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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