Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0352KEGG: sit:TM1040_1631 hypothetical protein. (380 aa)    
Predicted Functional Partners:
Pden_0353
TIGRFAM: phage/plasmid primase, P4 family; PFAM: Poxvirus D5 protein; KEGG: bld:BLi03629 hypothetical protein.
 
     0.942
Pden_0983
TIGRFAM: phage/plasmid primase, P4 family; PFAM: Poxvirus D5 protein; KEGG: lin:lin2587 similar to bacteriophage protein.
 
     0.750
Pden_1531
KEGG: mes:Meso_0533 hypothetical protein.
 
     0.573
Pden_0351
Hypothetical protein.
       0.537
Pden_1541
TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: mes:Meso_0538 ParB-like partition proteins.
 
     0.501
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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