STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0366TIGRFAM: phage head-tail adaptor, putative. (119 aa)    
Predicted Functional Partners:
Pden_0364
Hypothetical protein.
       0.779
Pden_0365
Hypothetical protein; KEGG: sit:TM1040_1619 phage conserved hypothetical protein, phiE125 gp8.
       0.773
Pden_0367
Hypothetical protein.
   
   0.675
Pden_0362
TIGRFAM: phage major capsid protein, HK97 family; KEGG: rsp:RSP_2067 putative prophage LambdaSo, major capsid protein, HK97 family.
  
 
 0.660
Pden_0363
Hypothetical protein.
       0.636
Pden_0360
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2069 putative phage portal protein, HK97 family.
  
   0.596
Pden_0361
PFAM: peptidase S14, ClpP; KEGG: rsp:RSP_2068 putative ClpP-like protease; Belongs to the peptidase S14 family.
  
    0.516
Pden_0358
PFAM: Resolvase helix-turn-helix domain protein; KEGG: sit:TM1040_1626 hypothetical protein.
       0.502
Pden_0359
PFAM: phage Terminase; KEGG: rsp:RSP_2070 putative phage-related terminase.
       0.499
Pden_2631
Hypothetical protein; KEGG: rpa:RPA1896 homologue of rhodobacter capsulatus gene transfer agent (GTA) orfg6 (21% identity).
  
 
 0.443
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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