STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0390PFAM: protein of unknown function DUF983; KEGG: ccr:CC1021 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Pden_1958
PFAM: Uncharacterized conserved protein UCP032146; KEGG: rde:RD1_1069 hypothetical protein; Belongs to the UPF0262 family.
 
   
 0.585
Pden_1550
PFAM: protein of unknown function DUF1052; KEGG: sil:SPO1766 hypothetical protein.
  
   
 0.546
Pden_0937
PFAM: protein of unknown function DUF339; KEGG: rsp:RSP_0761 hypothetical protein.
  
     0.520
ctaG
Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.516
Pden_2862
PFAM: protein of unknown function DUF1476; KEGG: sil:SPO1886 hypothetical protein.
  
     0.479
Pden_1960
KEGG: sit:TM1040_3566 conserved hypothetical protein.
  
     0.467
Pden_0389
Hypothetical protein.
       0.463
Pden_3980
PFAM: NUDIX hydrolase; KEGG: rsp:RSP_0419 hypothetical protein.
 
     0.455
Pden_2177
PFAM: protein of unknown function DUF1467; KEGG: rsp:RSP_0811 hypothetical protein.
  
     0.436
Pden_0635
PFAM: NUDIX hydrolase; KEGG: sit:TM1040_0668 NUDIX hydrolase.
 
     0.417
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.