node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pden_0436 | Pden_0437 | Pden_0436 | Pden_0437 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | KEGG: rde:RD1_3420 hypothetical protein. | 0.733 |
Pden_0436 | Pden_0510 | Pden_0436 | Pden_0510 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.757 |
Pden_0436 | Pden_0951 | Pden_0436 | Pden_0951 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.900 |
Pden_0436 | Pden_1384 | Pden_0436 | Pden_1384 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.900 |
Pden_0436 | Pden_1802 | Pden_0436 | Pden_1802 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | KEGG: rsp:RSP_6229 hypothetical protein. | 0.900 |
Pden_0436 | Pden_2023 | Pden_0436 | Pden_2023 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: rsp:RSP_0725 thioredoxin, thioldisulfide interchange protein. | 0.687 |
Pden_0436 | Pden_3020 | Pden_0436 | Pden_3020 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mca:MCA1549 succinate dehydrogenase, hydrophobic membrane anchor protein, putative. | 0.676 |
Pden_0436 | Pden_4377 | Pden_0436 | Pden_4377 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Ribonucleoside-diphosphate reductase class Ib alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.900 |
Pden_0436 | ccmG | Pden_0436 | Pden_1410 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Periplasmic protein thiol--disulfide oxidoreductase DsbE; Required for disulfide bond formation in some periplasmic proteins. Also acts as a disulfide oxidoreductase in cytochromes c biogenesis. The cysteines of apocytochromes c must be in the reduced state for covalent linkage between the two moieties to occur; Belongs to the thioredoxin family. DsbE subfamily. | 0.690 |
Pden_0436 | dut | Pden_0436 | Pden_1946 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.632 |
Pden_0437 | Pden_0436 | Pden_0437 | Pden_0436 | KEGG: rde:RD1_3420 hypothetical protein. | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.733 |
Pden_0510 | Pden_0436 | Pden_0510 | Pden_0436 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.757 |
Pden_0951 | Pden_0436 | Pden_0951 | Pden_0436 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.900 |
Pden_0951 | Pden_1384 | Pden_0951 | Pden_1384 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.906 |
Pden_0951 | Pden_2023 | Pden_0951 | Pden_2023 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: rsp:RSP_0725 thioredoxin, thioldisulfide interchange protein. | 0.540 |
Pden_0951 | Pden_4377 | Pden_0951 | Pden_4377 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Ribonucleoside-diphosphate reductase class Ib alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.900 |
Pden_0951 | ccmG | Pden_0951 | Pden_1410 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Periplasmic protein thiol--disulfide oxidoreductase DsbE; Required for disulfide bond formation in some periplasmic proteins. Also acts as a disulfide oxidoreductase in cytochromes c biogenesis. The cysteines of apocytochromes c must be in the reduced state for covalent linkage between the two moieties to occur; Belongs to the thioredoxin family. DsbE subfamily. | 0.544 |
Pden_0951 | dut | Pden_0951 | Pden_1946 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.535 |
Pden_1384 | Pden_0436 | Pden_1384 | Pden_0436 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.900 |
Pden_1384 | Pden_0951 | Pden_1384 | Pden_0951 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.906 |