node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pden_0342 | Pden_0449 | Pden_0342 | Pden_0449 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | 0.953 |
Pden_0342 | Pden_0904 | Pden_0342 | Pden_0904 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | PFAM: DNA polymerase III chi subunit, HolC; KEGG: sil:SPO2452 DNA polymerase III, chi subunit, putative. | 0.944 |
Pden_0342 | Pden_0970 | Pden_0342 | Pden_0970 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | 0.900 |
Pden_0342 | Pden_1762 | Pden_0342 | Pden_1762 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | KEGG: rsp:RSP_3553 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.974 |
Pden_0342 | Pden_2145 | Pden_0342 | Pden_2145 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | KEGG: rsp:RSP_0674 DNA polymerase III subunit delta. | 0.991 |
Pden_0342 | Pden_2767 | Pden_0342 | Pden_2767 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: sil:SPO3434 DNA polymerase III delta subunit. | 0.972 |
Pden_0342 | Pden_2834 | Pden_0342 | Pden_2834 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.923 |
Pden_0342 | dnaQ | Pden_0342 | Pden_2815 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.977 |
Pden_0342 | dnaX | Pden_0342 | Pden_3649 | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.972 |
Pden_0446 | Pden_0449 | Pden_0446 | Pden_0449 | PFAM: zinc finger, CHC2-family protein; KEGG: bpa:BPP0490 putative DNA primase. | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | 0.788 |
Pden_0446 | Pden_1762 | Pden_0446 | Pden_1762 | PFAM: zinc finger, CHC2-family protein; KEGG: bpa:BPP0490 putative DNA primase. | KEGG: rsp:RSP_3553 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.418 |
Pden_0449 | Pden_0342 | Pden_0449 | Pden_0342 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | 0.953 |
Pden_0449 | Pden_0446 | Pden_0449 | Pden_0446 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | PFAM: zinc finger, CHC2-family protein; KEGG: bpa:BPP0490 putative DNA primase. | 0.788 |
Pden_0449 | Pden_0904 | Pden_0449 | Pden_0904 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | PFAM: DNA polymerase III chi subunit, HolC; KEGG: sil:SPO2452 DNA polymerase III, chi subunit, putative. | 0.927 |
Pden_0449 | Pden_0970 | Pden_0449 | Pden_0970 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | KEGG: jan:Jann_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain. | 0.953 |
Pden_0449 | Pden_1762 | Pden_0449 | Pden_1762 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | KEGG: rsp:RSP_3553 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.961 |
Pden_0449 | Pden_2145 | Pden_0449 | Pden_2145 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | KEGG: rsp:RSP_0674 DNA polymerase III subunit delta. | 0.919 |
Pden_0449 | Pden_2767 | Pden_0449 | Pden_2767 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: sil:SPO3434 DNA polymerase III delta subunit. | 0.936 |
Pden_0449 | Pden_2834 | Pden_0449 | Pden_2834 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.953 |
Pden_0449 | dnaQ | Pden_0449 | Pden_2815 | PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ret:RHE_PE00402 probable polymerase epsilon subunit protein. | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.900 |