Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Pden_0691PFAM: Chorismate mutase; KEGG: rsp:RSP_0662 putative chorismate mutase. (105 aa)    
Predicted Functional Partners:
Pden_2382
TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: tfu:Tfu_1872 isochorismate synthase.
  
 
 0.978
Pden_2383
PFAM: isochorismatase hydrolase; KEGG: bsu:BG11241 isochorismatase (2,3 dihydro-2,3 dihydroxybenzoate synthase).
     
 0.900
Pden_3009
TIGRFAM: chorismate mutase related enzymes; PFAM: Chorismate mutase; KEGG: pfl:PFL_3489 isochorismate pyruvate-lyase.
     
  0.900
Pden_3934
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; KEGG: rsp:RSP_2921 phospho-2-dehydro-3-deoxyheptonate; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II.
   
 
 0.736
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
  
  
 0.701
Pden_2386
TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: bms:BRA0015 2,3-dihydroxybenzoate-AMP ligase.
  
  
 0.692
Pden_3008
PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_B0670 AMP-dependent synthetase and ligase.
  
  
 0.692
rpmC
PFAM: ribosomal protein L29; KEGG: jan:Jann_0599 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
    0.646
rplV
LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
  
    0.619
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
    0.612
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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