Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Pden_0728PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rsp:RSP_3678 siderophore-interacting protein. (345 aa)    
Predicted Functional Partners:
Pden_3530
PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: cgb:cg0054 iron-chelator utilization protein.
  
     0.756
Pden_0725
TIGRFAM: TonB family protein; KEGG: rpb:RPB_1657 TonB-like protein.
 
  
 0.723
Pden_0729
PFAM: aminotransferase, class V; KEGG: rsp:RSP_0245 serine-pyruvate aminotransferase/aspartate aminotransferase.
       0.599
Pden_2387
PFAM: condensation domain protein; KEGG: bmb:BruAb2_0017 hypothetical enterobactin synthetase, component F.
 
  
 0.574
Pden_0727
PFAM: MotA/TolQ/ExbB proton channel; KEGG: atc:AGR_C_264 biopolymer transport ExbB protein; TC 2.C.1.1.1.
  
  
 0.572
Pden_2526
KEGG: sit:TM1040_2223 conserved hypothetical protein.
  
    0.572
Pden_0726
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: atc:AGR_C_265 biopolymer transport ExbD protein; TC 2.C.1.1.1.
  
  
 0.571
Pden_3008
PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_B0670 AMP-dependent synthetase and ligase.
 
  
 0.568
Pden_2386
TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: bms:BRA0015 2,3-dihydroxybenzoate-AMP ligase.
 
  
 0.553
Pden_2456
PFAM: protein of unknown function DUF1215; KEGG: rsp:RSP_3490 hypothetical protein.
  
     0.542
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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