STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0735Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: mmr:Mmar10_2526 carboxymethylenebutenolidase. (296 aa)    
Predicted Functional Partners:
Pden_1174
KEGG: bam:Bamb_6587 muconate and chloromuconate cycloisomerases; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.
  
 
 0.924
Pden_0736
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr0519 hypothetical protein.
  
    0.649
Pden_0737
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sme:SMc04046 hypothetical protein.
  
    0.622
Pden_0733
KEGG: jan:Jann_1800 hypothetical protein.
 
     0.483
tuf1
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
       0.423
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.421
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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