Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Pden_0740KEGG: jan:Jann_3368 hypothetical protein. (303 aa)    
Predicted Functional Partners:
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
       0.764
Pden_2240
KEGG: jan:Jann_1184 lipoprotein, putative.
  
     0.720
Pden_2292
KEGG: sit:TM1040_0020 conserved hypothetical protein.
 
     0.685
Pden_1931
KEGG: rsp:RSP_6052 hypothetical protein.
  
     0.683
Pden_2135
KEGG: cel:ZK84.1 Hypothetical protein ZK84.1.
  
     0.679
Pden_1407
KEGG: rsp:RSP_2286 hypothetical protein.
  
     0.674
Pden_1237
KEGG: sil:SPO0951 hypothetical protein.
  
     0.671
Pden_4031
KEGG: jan:Jann_0572 hypothetical protein.
 
     0.664
Pden_2839
PFAM: protein of unknown function DUF306, Meta and HslJ.
  
     0.646
Pden_3925
KEGG: jan:Jann_1578 transcriptional regulator, SARP family.
  
     0.639
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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