Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Pden_0752KEGG: jan:Jann_0574 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Pden_0751
PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_1711 possible transporter, RhaT family, DMT superfamily.
       0.785
Pden_3871
KEGG: jan:Jann_1985 hypothetical protein.
  
     0.656
Pden_2292
KEGG: sit:TM1040_0020 conserved hypothetical protein.
  
     0.650
Pden_2242
KEGG: sil:SPO2775 hypothetical protein.
  
     0.648
Pden_0835
KEGG: sit:TM1040_2399 membrane protein, putative.
  
     0.623
Pden_0596
KEGG: rsp:RSP_0453 hypothetical protein.
  
     0.593
Pden_2690
KEGG: ppu:PP_4887 hypothetical protein.
  
     0.579
Pden_0846
PFAM: lipopolysaccharide biosynthesis; KEGG: pen:PSEEN2947 exopolysaccharide transport protein.
  
     0.562
Pden_0315
PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; homoserine dehydrogenase, NAD-binding; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: sil:SPO0852 oxidoreductase, Gfo/Idh/MocA family.
  
     0.556
Pden_0838
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; formyl transferase domain protein; phosphopantetheine-binding; luciferase family protein; KEGG: sil:SPO0847 non-ribosomal peptide synthetase.
  
     0.546
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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