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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0787KEGG: jan:Jann_0620 N-acyl-L-homoserine lactone synthetase-like; Belongs to the autoinducer synthase family. (196 aa)    
Predicted Functional Partners:
Pden_0786
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: jan:Jann_0619 transcriptional regulator, LuxR family.
 
  
 0.936
Pden_3724
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Bacterio-opsin activator, HTH domain protein; Sigma-70, region 4 type 2; KEGG: sit:TM1040_1212 transcriptional regulator, LuxR family.
 
  
 0.857
Pden_0081
PFAM: regulatory protein, LuxR; KEGG: sil:SPO1388 transcriptional regulator, LuxR family/hydrolase, alpha/beta fold family.
  
  
 0.783
Pden_0788
Recombination protein MgsA; PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rsp:RSP_1743 ATPase, AAA family.
       0.668
crcB
Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.662
Pden_0790
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.662
Pden_0792
PFAM: ATP12 ATPase; KEGG: jan:Jann_0626 ATP12 ATPase.
       0.662
Pden_0431
KEGG: rsp:RSP_6127 hypothetical protein.
  
     0.656
Pden_1753
KEGG: rsp:RSP_0683 hypothetical protein.
  
     0.638
Pden_0791
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sil:SPO0517 HAD-superfamily hydrolase, subfamily IA, variant 1.
       0.625
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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