STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0803PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: bms:BRA0311 transporter, putative. (544 aa)    
Predicted Functional Partners:
Pden_0801
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0099 peptide/opine/nickel uptake family ABC transporter, permease protein.
       0.630
Pden_0802
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3436 binding-protein-dependent transport systems inner membrane component.
       0.630
Pden_0800
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sil:SPO0098 peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
    0.627
Pden_3524
PFAM: transport system permease protein; KEGG: sme:SMa1742 putative iron uptake protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.498
Pden_3534
PFAM: transport system permease protein; KEGG: pfl:PFL_3625 ferric vibriobactin ABC transporter, permease protein VC0778; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.496
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
  
    0.446
Pden_3531
PFAM: periplasmic binding protein; KEGG: pae:PA4159 ferric enterobactin transport system substrate-binding protein.
   
  
 0.418
Pden_3507
PFAM: Amidohydrolase 3; KEGG: reu:Reut_B4849 conserved hypothetical protein PA2699.
 
     0.417
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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