STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family. (433 aa)    
Predicted Functional Partners:
Pden_0183
PFAM: FAD dependent oxidoreductase; KEGG: bpa:BPP2721 D-amino acid dehydrogenase small subunit.
  
  
 
0.917
Pden_1664
KEGG: sme:SMc03211 putative 4-hydroxyphenylpyruvate dioxygenase protein; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.912
Pden_0630
PFAM: aminotransferase, class I and II; KEGG: rde:RD1_0935 aromatic amino acid aminotransferase.
     
 0.903
Pden_0652
PFAM: aminotransferase, class I and II; KEGG: sil:SPO3027 aminotransferase, classes I and II.
   
 
 0.902
Pden_0798
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; PFAM: aminotransferase, class IV; KEGG: rsp:RSP_1768 aminotransferase class IV, putative D-alanine aminotransferase.
     
 0.902
Pden_0938
PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_0763 aspartate aminotransferase.
    
 0.902
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: rsp:RSP_2284 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.902
Pden_3420
PFAM: aminotransferase, class I and II; KEGG: rsp:RSP_3439 aspartate aminotransferase.
    
 0.902
Pden_3425
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; PFAM: aminotransferase, class IV; KEGG: rsp:RSP_3455 D-alanine aminotransferase.
     
 0.902
Pden_0515
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: rsp:RSP_2689 putative sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 
 0.899
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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