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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0807PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1754 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Pden_1381
PFAM: Invasion associated locus B family protein; KEGG: rsp:RSP_2778 hypothetical protein.
  
     0.613
Pden_2659
Murein endopeptidase, Metallo peptidase, MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: sit:TM1040_2663 peptidase U6, penicillin-insensitive murein endopeptidase.
  
     0.593
Pden_0805
PFAM: Transglycosylase-associated protein; KEGG: bur:Bcep18194_B2685 transglycosylase-associated protein.
  
  
 0.588
Pden_0806
Hypothetical protein.
       0.561
Pden_4035
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rsp:RSP_2326 cell division protein FtsI.
     
 0.526
Pden_4043
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1201 hypothetical protein.
 
  
 0.513
Pden_0638
PFAM: conserved hypothetical protein 1620; KEGG: sil:SPO3140 hypothetical protein.
  
     0.507
Pden_0808
KEGG: tpa:TP0470 hypothetical protein.
       0.499
Pden_2578
KEGG: rsp:RSP_1201 hypothetical protein.
 
  
 0.497
Pden_0809
PFAM: Lytic transglycosylase, catalytic; KEGG: sme:SMc01230 putative transglycosylase transmembrane protein.
 
     0.480
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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