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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0809PFAM: Lytic transglycosylase, catalytic; KEGG: sme:SMc01230 putative transglycosylase transmembrane protein. (303 aa)    
Predicted Functional Partners:
Pden_0808
KEGG: tpa:TP0470 hypothetical protein.
       0.570
Pden_2109
ATPase, FliI/YscN family; KEGG: rsp:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
 
  
 0.484
Pden_0807
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1754 hypothetical protein.
 
     0.480
Pden_2106
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH01741 hypothetical protein.
  
     0.447
Pden_1404
PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_2289 flagellar motor protein.
 
  
 0.443
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: rsp:RSP_1329 putative flagellar hook-basal body complex protein.
  
  
 0.401
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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