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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_0809PFAM: Lytic transglycosylase, catalytic; KEGG: sme:SMc01230 putative transglycosylase transmembrane protein. (303 aa)    
Predicted Functional Partners:
Pden_0808
KEGG: tpa:TP0470 hypothetical protein.
       0.570
Pden_0807
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1754 hypothetical protein.
 
   
 0.485
Pden_2106
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH01741 hypothetical protein.
 
   
 0.453
Pden_1404
PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_2289 flagellar motor protein.
 
  
 0.452
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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