STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0843KEGG: sil:SPO0844 hypothetical protein. (256 aa)    
Predicted Functional Partners:
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
 
 
 0.802
Pden_0838
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; formyl transferase domain protein; phosphopantetheine-binding; luciferase family protein; KEGG: sil:SPO0847 non-ribosomal peptide synthetase.
 
   
 0.774
Pden_0835
KEGG: sit:TM1040_2399 membrane protein, putative.
 
   
 0.760
Pden_0840
PFAM: glycosyl transferase, group 1; KEGG: sil:SPO0842 glycosyl transferase, group 1 family protein.
 
  
 0.754
Pden_2673
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: sil:SPO3416 FtsK/SpoIIIE family protein.
  
 
 0.712
Pden_3279
Hypothetical protein; KEGG: sil:SPO3430 outer membrane porin.
  
    0.711
Pden_0844
PFAM: glycosyl transferase, family 2; KEGG: sil:SPO0843 glycosyl transferase, group 2 family protein.
 
  
 0.706
Pden_0847
PFAM: polysaccharide biosynthesis protein; KEGG: sil:SPO0841 polysaccharide biosynthesis protein.
 
   
 0.691
Pden_2763
KEGG: sil:SPO3430 outer membrane porin.
  
    0.659
Pden_0845
ATPases involved in chromosome partitioning-like protein; KEGG: sil:SPO0839 exopolysaccharide biosynthesis domain protein.
 
  
 0.654
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.