STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0865PFAM: transport system permease protein; ABC-3 protein; KEGG: rpd:RPD_2479 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (322 aa)    
Predicted Functional Partners:
Pden_0864
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2478 ABC transporter related.
 
 
 0.961
Pden_0866
PFAM: periplasmic binding protein; KEGG: rpa:RPA0151 possible iron ABC transporter periplasmic binding protein.
 
 
 0.949
Pden_3033
PFAM: periplasmic binding protein; KEGG: eca:ECA3564 iron-chelating periplasmic-binding protein.
 
 
 0.843
Pden_3032
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nwi:Nwi_2074 ABC transporter, ATPase subunit.
 
 
 0.831
Pden_1168
PFAM: periplasmic binding protein; KEGG: hin:HI1472 putative iron transport system substrate-binding protein.
 
 
 0.803
Pden_1170
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2310 putative iron ABC transporter ATP-binding protein.
 
 
 0.802
Pden_0867
PFAM: protein of unknown function UPF0066; KEGG: bja:bll5136 VirR.
 
     0.776
hmuV
ABC transporter related protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.774
Pden_1142
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_1437 ABC Fe+3 hydroxamate (ferrichrome) transporter, ATPase subunit.
 
 
 0.753
Pden_0868
Hypothetical protein.
       0.737
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.