node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pden_0037 | Pden_0040 | Pden_0037 | Pden_0040 | PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sit:TM1040_3654 UBA/ThiF-type NAD/FAD binding fold. | TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: bmb:BruAb1_0211 thiamine biosynthesis ThiS. | 0.985 |
Pden_0037 | ttcA | Pden_0037 | Pden_0875 | PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sit:TM1040_3654 UBA/ThiF-type NAD/FAD binding fold. | PP-loop domain protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.571 |
Pden_0040 | Pden_0037 | Pden_0040 | Pden_0037 | TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: bmb:BruAb1_0211 thiamine biosynthesis ThiS. | PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sit:TM1040_3654 UBA/ThiF-type NAD/FAD binding fold. | 0.985 |
Pden_0040 | ttcA | Pden_0040 | Pden_0875 | TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: bmb:BruAb1_0211 thiamine biosynthesis ThiS. | PP-loop domain protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.686 |
Pden_0409 | ttcA | Pden_0409 | Pden_0875 | PFAM: aminotransferase, class V; KEGG: ret:RHE_PE00221 hypothetical protein. | PP-loop domain protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.903 |
Pden_0874 | Pden_0876 | Pden_0874 | Pden_0876 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | 0.488 |
Pden_0874 | Pden_0878 | Pden_0874 | Pden_0878 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | PFAM: MOSC domain containing protein; KEGG: rsp:RSP_1065 hypothetical protein. | 0.417 |
Pden_0874 | engB | Pden_0874 | Pden_0879 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Small GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.528 |
Pden_0874 | rnpA | Pden_0874 | Pden_0873 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.988 |
Pden_0874 | rpmH | Pden_0874 | Pden_0872 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | PFAM: ribosomal protein L34; KEGG: rsp:RSP_1059 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.886 |
Pden_0874 | ttcA | Pden_0874 | Pden_0875 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | PP-loop domain protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.773 |
Pden_0874 | yidC | Pden_0874 | Pden_0877 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.893 |
Pden_0876 | Pden_0874 | Pden_0876 | Pden_0874 | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.488 |
Pden_0876 | Pden_0878 | Pden_0876 | Pden_0878 | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | PFAM: MOSC domain containing protein; KEGG: rsp:RSP_1065 hypothetical protein. | 0.447 |
Pden_0876 | engB | Pden_0876 | Pden_0879 | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | Small GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.452 |
Pden_0876 | rnpA | Pden_0876 | Pden_0873 | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.488 |
Pden_0876 | rpmH | Pden_0876 | Pden_0872 | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | PFAM: ribosomal protein L34; KEGG: rsp:RSP_1059 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.437 |
Pden_0876 | ttcA | Pden_0876 | Pden_0875 | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | PP-loop domain protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.599 |
Pden_0876 | yidC | Pden_0876 | Pden_0877 | Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rde:RD1_1456 EAL domain protein. | Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.452 |
Pden_0878 | Pden_0874 | Pden_0878 | Pden_0874 | PFAM: MOSC domain containing protein; KEGG: rsp:RSP_1065 hypothetical protein. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.417 |