STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0941PFAM: Malate/L-lactate dehydrogenase; KEGG: atc:AGR_L_410 probable L-malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (344 aa)    
Predicted Functional Partners:
Pden_4379
PFAM: Bile acid:sodium symporter; KEGG: mes:Meso_2484 bile acid:sodium symporter.
  
    0.814
Pden_1105
PFAM: peptidase M19, renal dipeptidase; KEGG: cps:CPS_4019 peptidase, M19 family.
  
    0.583
Pden_1304
Dipeptidase AC, Metallo peptidase, MEROPS family M19; PFAM: peptidase M19, renal dipeptidase; KEGG: rsp:RSP_0802 dipeptidase.
  
    0.583
Pden_1592
Dipeptidase AC, Metallo peptidase, MEROPS family M19; PFAM: peptidase M19, renal dipeptidase; KEGG: rsp:RSP_0802 dipeptidase.
  
    0.583
Pden_1833
PFAM: peptidase M19, renal dipeptidase; KEGG: sit:TM1040_0564 peptidase M19, renal dipeptidase.
  
    0.583
Pden_4119
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.502
Pden_0940
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sil:SPO2668 transcriptional regulator, LysR family.
  
    0.489
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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