Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_0949PFAM: DNA/RNA non-specific endonuclease; KEGG: rha:RHA1_ro05345 hypothetical protein. (337 aa)    
Predicted Functional Partners:
Pden_0182
RNAse Z; KEGG: rme:Rmet_3785 beta-lactamase-like protein.
   
 
 0.819
Pden_0950
Fervidolysin, Serine peptidase, MEROPS family S08A; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: bha:BH0684 prepro-alkaline protease.
 
   
 0.636
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.598
Pden_2615
PFAM: Patatin; KEGG: sus:Acid_5056 patatin.
 
     0.576
Pden_0515
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: rsp:RSP_2689 putative sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
   
 
 0.571
Pden_1931
KEGG: rsp:RSP_6052 hypothetical protein.
  
     0.571
Pden_1197
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ppu:PP_4753 N-methylproline demethylase, putative.
   
 
 0.567
Pden_1200
KEGG: oih:OB0951 hypothetical protein.
  
     0.528
Pden_2135
KEGG: cel:ZK84.1 Hypothetical protein ZK84.1.
  
   
 0.516
Pden_2243
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
    0.516
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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