Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_0959KEGG: rsp:RSP_0381 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Pden_0960
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: rsp:RSP_0380 hypothetical protein.
 
   
 0.939
Pden_0957
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rde:RD1_1887 polyhydroxyalkanoate depolymerase, intracellular, putative.
 
   
 0.927
Pden_0958
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rde:RD1_1888 poly(3-hydroxyalkanoate) polymerase, putative.
 
   
 0.895
Pden_3968
KEGG: rsp:RSP_0433 hypothetical protein.
  
     0.771
Pden_3975
PFAM: protein of unknown function DUF847; KEGG: rsp:RSP_2944 hypothetical protein.
  
     0.771
Pden_1741
KEGG: sit:TM1040_1503 conserved hypothetical protein.
  
     0.769
Pden_3976
KEGG: rsp:RSP_6081 hypothetical protein.
  
     0.768
Pden_0627
KEGG: rsp:RSP_1011 hypothetical protein.
  
     0.767
Pden_0431
KEGG: rsp:RSP_6127 hypothetical protein.
  
     0.766
Pden_0604
KEGG: sil:SPO1317 hypothetical protein.
  
     0.766
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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