Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Pden_0983TIGRFAM: phage/plasmid primase, P4 family; PFAM: Poxvirus D5 protein; KEGG: lin:lin2587 similar to bacteriophage protein. (612 aa)    
Predicted Functional Partners:
Pden_0981
KEGG: sit:TM1040_1631 hypothetical protein.
 
     0.941
Pden_0979
Hypothetical protein.
       0.773
Pden_0980
Hypothetical protein.
       0.773
Pden_0982
Hypothetical protein.
       0.773
Pden_0352
KEGG: sit:TM1040_1631 hypothetical protein.
 
     0.750
Pden_0989
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2069 putative phage portal protein, HK97 family.
 
     0.648
Pden_0985
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsp:RSP_2072 putative phage-related holin protein.
 
     0.614
Pden_0360
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2069 putative phage portal protein, HK97 family.
 
     0.588
Pden_2063
KEGG: son:SO2967 hypothetical phage terminase large subunit.
 
     0.540
Pden_0990
PFAM: peptidase S14, ClpP; KEGG: rsp:RSP_2068 putative ClpP-like protease.
 
     0.533
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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