Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_1024PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rde:RD1_2364 spermidine/putrescine ABC transporter, ATP-binding protein, putative. (362 aa)    
Predicted Functional Partners:
Pden_1022
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2368 putrescine ABC transporter, permease protein.
 
 0.994
Pden_1023
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2367 spermidine/putrescine transport system, permease protein.
 
 0.994
Pden_1021
KEGG: rde:RD1_2369 spermidine/putrescine ABC transporter, periplasmic binding protein, putative.
 
 0.980
Pden_4067
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0016 ABC spermidine/putrescine transporter, inner membrane subunit.
 
 0.972
Pden_4068
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_0017 ABC spermidine/putrescine transporter, inner membrane subunit.
 
 0.969
Pden_4066
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_0015 ABC spermidine/putrescine transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
  
 
0.914
Pden_4502
KEGG: rsp:RSP_2141 ABC polyamine transporter, periplasmic substrate-binding protein.
 
 0.904
Pden_0469
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_0565 polyamine ABC transporter, permease protein.
 
 
 0.865
Pden_0468
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP_0413 polyamine ABC transporter, permease protein.
 
 
 0.807
Pden_2149
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1886 ABC polyamine/opine transporter, inner membrane subunit.
 
 
 0.714
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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