Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_1027TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_47950 putative amino acid ABC transporter permease; TC 3.A.1.3.-. (223 aa)    
Predicted Functional Partners:
Pden_1028
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20266 putative amino acid ABC transporter ATP-binding protein; TC 3.A.1.3.-.
 
 0.997
Pden_1025
PFAM: extracellular solute-binding protein, family 3; KEGG: atc:AGR_L_407 probable binding protein component of ABC transporter; TC 3.A.1.3.-.
 
 0.991
Pden_1026
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20264 putative amino acid ABC transporter permease protein; TC 3.A.1.3.-.
 
 
 
0.986
Pden_0794
General L-amino acid transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1748 ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB.
 
 
 0.940
Pden_1075
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_1133 amino acid ABC transporter, ATP-binding protein; TC 3.A.1.3.-.
 
 
 0.879
Pden_1152
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bms:BR1959 amino acid ABC transporter, ATP-binding protein; TC 3.A.1.3.-.
 
 
 0.879
Pden_0796
L-aspartate ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO0522 glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein.
 
 
 0.878
Pden_1150
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmb:BruAb1_1932 amino acid ABC transporter, ATP-binding protein; TC 3.A.1.3.-.
 
 
 0.878
Pden_0719
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A1298 ABC transporter component; TC 3.A.1.3.-.
 
 
 0.876
Pden_0280
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20427 putative amino acid ABC transporter ATP-binding protein.
 
 
 0.874
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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